From c76d006571d94e1faa6fc1bd26098b13e246e9c6 Mon Sep 17 00:00:00 2001
From: mlefter <m.lefter@lumc.nl>
Date: Tue, 20 Nov 2018 15:00:58 +0100
Subject: [PATCH] Switch to tex
---
images/Python.svg | 205 +++++++++++
introduction/presentation/presentation.tex | 390 +++++++++++++++++++++
2 files changed, 595 insertions(+)
create mode 100644 images/Python.svg
create mode 100644 introduction/presentation/presentation.tex
diff --git a/images/Python.svg b/images/Python.svg
new file mode 100644
index 0000000..6d46c9b
--- /dev/null
+++ b/images/Python.svg
@@ -0,0 +1,205 @@
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diff --git a/introduction/presentation/presentation.tex b/introduction/presentation/presentation.tex
new file mode 100644
index 0000000..4aa6da7
--- /dev/null
+++ b/introduction/presentation/presentation.tex
@@ -0,0 +1,390 @@
+\documentclass[slidestop]{beamer}
+
+\author{Mihai Lefter}
+\title{Python Programming}
+\providecommand{\mySubTitle}{Introduction}
+\providecommand{\myConference}{Work discussion}
+\providecommand{\myDate}{27-11-2018}
+\providecommand{\myGroup}{}
+\providecommand{\myDepartment}{}
+\providecommand{\myCenter}{}
+
+\usetheme{lumc}
+
+\usepackage{minted}
+\usepackage{tikz}
+\usepackage[many]{tcolorbox}
+
+\definecolor{monokaibg}{HTML}{272822}
+
+\newenvironment{ipython}
+ {\begin{tcolorbox}[title=IPython,
+ title filled=false,
+ fonttitle=\scriptsize,
+ fontupper=\footnotesize,
+ enhanced,
+ colback=monokaibg,
+ drop small lifted shadow,
+ boxrule=0.1mm,
+ left=0.1cm,
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+
+\tcbuselibrary{listings}
+\newlength\inwd
+\setlength\inwd{1.3cm}
+
+\newcounter{ipythcntr}
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+
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+ sharp corners,
+ enlarge left by=\inwd,
+ width=\linewidth-\inwd,
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+ stringstyle=\color{mygreen},
+ numbers=none,
+ frame=none
+ },
+}
+
+
+
+\begin{document}
+
+% This disables the \pause command, handy in the editing phase.
+%\renewcommand{\pause}{}
+
+% Make the title slide.
+\makeTitleSlide{\includegraphics[height=3.5cm]{../../images/Python.pdf}}
+
+% First page of the presentation.
+\section{Introduction}
+\makeTableOfContents
+
+\subsection{About the course}
+\begin{pframe}
+ \begin{itemize}
+ \item Aimed at PhD students, Postdocs, researchers, analysts, ...
+ \item Focus on:
+ \begin{itemize}
+ \item Basic understanding of Python.
+ \item Programming as a tool to do your research.
+ \item Slightly biased on bioinformatics.
+ \end{itemize}
+ \end{itemize}
+\end{pframe}
+
+\subsection{Hands on!}
+\begin{pframe}
+ Programming is fun!
+ \begin{itemize}
+ \item You only learn programming by doing it.
+ \item Lecture format:
+ \begin{itemize}
+ \item Blended teaching + exercising.
+ \end{itemize}
+ \item Have your laptop open during the lessons.
+ \item Repeat the code from the slides, play around with it.
+ \item Do the session exercises.
+ \item There will be a few assignments to submit.
+ \end{itemize}
+\end{pframe}
+
+\subsection{Teachers}
+\begin{pframe}
+ \begin{itemize}
+ \item Sander Bollen \\
+ \url{a.h.b.bollen@lumc.nl}
+ \item Jonathan Vis \\
+ \url{j.k.vis@lumc.nl}
+ \item Mark Santcroos \\
+ \url{m.a.santcroos@lumc.nl}
+ \item Guy Allard \\
+ \url{w.g.Allard@lumc.nl}
+ \item Mihai Lefter\\
+ \url{m.lefter@lumc.nl}
+ \end{itemize}
+\end{pframe}
+
+\subsection{Software requirements}
+\begin{pframe}
+ \begin{itemize}
+ \item Anaconda:
+ \begin{itemize}
+ \item Python 3.7
+ \item Comes with all that's required:
+ \begin{itemize}
+ \item Python interpreter.
+ \item Jupyter Notebook.
+ \item Libraries: NumPy, Panda, matplotlib, Bokeh, Biopython, ...
+ \end{itemize}
+ \item \href{http://docs.anaconda.com/anaconda/install/}{Installation instructions}.
+ \end{itemize}
+ \item Git.
+ \end{itemize}
+\end{pframe}
+
+\subsection{Assignments}
+\begin{pframe}
+ \begin{itemize}
+ \item We make use of GitHub Classroom.
+ \begin{itemize}
+ \item GitHub account required.
+ \item Receive link with assignment repository.
+ \end{itemize}
+ \item Own forked repository to work on:
+ \begin{itemize}
+ \item Clone it.
+ \item Code.
+ \item Push it.
+ \end{itemize}
+ \item Direct file upload to repository is also possible.
+ \end{itemize}
+\end{pframe}
+
+\subsection{Getting help}
+\begin{pframe}
+ \begin{itemize}
+ \item Ask a teacher.
+ \item If it's private, mail one of the teachers.
+ \end{itemize}
+\end{pframe}
+
+\section{About Python}
+
+\subsection{History}
+\begin{pframe}
+ \begin{itemize}
+ \item Created early 90's by Guido van Rossem at CWI.
+ \begin{itemize}
+ \item Name: Monty Python.
+ \end{itemize}
+ \item General purpose, high-level programming language.
+ \item Design is driven by code readability.
+ \end{itemize}
+\end{pframe}
+
+\subsection{Features}
+\begin{pframe}
+ \begin{itemize}
+ \item Interpreted, no separate compilation step needed.
+ \item Imperative and object-oriented programming.
+ \begin{itemize}
+ \item And some functional programming.
+ \end{itemize}
+ \item Dynamic type system.
+ \item Automatic memory management.
+ \end{itemize}
+ We'll come back to most of this.
+\end{pframe}
+
+\subsection{Why Python?}
+\begin{pframe}
+ \begin{itemize}
+ \item Readable and low barrier to entry.
+ \item Rich scientific libraries.
+ \item Many other libraries available.
+ \item Widely used with a large community.
+ \end{itemize}
+\end{pframe}
+
+\subsection{Python 2 versus Python 3}
+\begin{pframe}
+ \begin{itemize}
+ \item Python 3 is backwards incompatible.
+ \item Some libraries don't support it yet.
+ \item Python 2.7 is the last Python 2.
+ \item Some Python 3 features are backported in Python 2.7.
+ \item Python 2.7 will no longer .
+ \end{itemize}
+ We use Python 3.7 for the time being.
+\end{pframe}
+
+% \subsection{}
+% \begin{pframe}
+% \begin{itemize}
+% \item
+% \end{itemize}
+% \end{pframe}
+
+\section{Python as a calculator}
+
+\subsection{Integers}
+\begin{pframe}
+ \begin{pyin}
+17
+ \end{pyin}
+ \begin{pyout}
+17
+ \end{pyout}
+ \begin{pyin}
+(17 + 4) * 2
+ \end{pyin}
+ \begin{pyout}
+42
+ \end{pyout}
+\end{pframe}
+
+\subsection{Floating point numbers}
+\begin{pframe}
+ \begin{pyin}
+3.2 * 18 - 2.1
+ \end{pyin}
+ \begin{pyout}
+55.5
+ \end{pyout}
+ \begin{pyin}
+36. / 5
+ \end{pyin}
+ \begin{pyout}
+7.2
+ \end{pyout}
+
+Scientific notation:
+ \begin{pyin}
+1.3e20 + 2
+ \end{pyin}
+ \begin{pyout}
+1.3e+20
+ \end{pyout}
+ \begin{pyin}
+1.3 * 10**20
+ \end{pyin}
+ \begin{pyout}
+1.3e+20
+ \end{pyout}
+
+\end{pframe}
+
+% \begin{pframe}
+% \begin{ipython}
+% \begin{minted}[breaklines=true,style=monokai]{python}
+% a = 100
+% \end{minted}
+% \end{ipython}
+% \end{pframe}
+
+
+% Make the acknowledgements slide.
+\makeAcknowledgementsSlide{
+ \begin{tabular}{ll}
+ \bf Department one & \bf Other department\\
+ Colleague one & Someone\\
+ Colleague two & Someone else\\
+ Colleague three & Someone's supervisor\\
+ Supervisor\\
+ \end{tabular}
+ \bigskip
+
+ \begin{tabular}{llll}
+ \includegraphics[height=1cm]{logos/lumc_logo_small} &
+ \includegraphics[height=1cm]{logos/ul_logo_white} &
+ \includegraphics[height=1cm]{logos/lumc_logo_small} &
+ \includegraphics[height=1cm]{logos/ul_logo_white}
+ \end{tabular}
+}
+
+\end{document}
--
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