From 28f26e1b4c2e657c5e18f566a6d7470d3047f224 Mon Sep 17 00:00:00 2001 From: Michiel van Galen <m.van_galen@lumc.nl> Date: Tue, 6 May 2014 11:53:13 +0200 Subject: [PATCH] Updating the curl command --- INSTALL.md | 224 ++++++++++++++++++++++++++--------------------------- 1 file changed, 112 insertions(+), 112 deletions(-) diff --git a/INSTALL.md b/INSTALL.md index deaf2b1..c231d0f 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -1,112 +1,112 @@ -Software installation -===================== - -The following guide gets you a virtual environment with all the necessary -packages installed. - - -Linux ------ - -We assume Ubuntu (12.04 Quantal Quetzal or later) or Debian Linux (7.0 Wheezy -or later), but if you manage to install everything on a different flavour -that's also fine. - -You can [download Ubuntu here](http://www.ubuntu.com/) and either install it -directly on your machine, or run it inside -[VirtualBox](https://www.virtualbox.org/). - -Python version >= 2.7.3 and < 3.0 is required. This is installed by default on -Ubuntu and Debian Linux. Note that we use Python 2, *not* Python 3. - -We need some system packages to be installed. For the following command, you -need sudo rights: - - sudo apt-get install -y \ - curl python-qt4 libfreetype6-dev libpng12-dev python-cairo \ - python-gtk2 python-gtk2-dev git gfortran - -From here on, everything is local for the current user. - -Install [virtualenv](http://www.virtualenv.org/) and -[virtualenvwrapper](http://virtualenvwrapper.readthedocs.org/) using -[Virtualenv Burrito](https://github.com/brainsik/virtualenv-burrito): - - curl -s https://raw.github.com/brainsik/virtualenv-burrito/master/virtualenv-burrito.sh | $SHELL - source ~/.venvburrito/startup.sh - -Automatically -[link PyGTK/Pycairo/PyQt system packages](https://gist.github.com/martijnvermaat/6111396/) -into our virtual environments: - - curl -s https://gist.github.com/martijnvermaat/6111396/raw/postmkvirtualenv > ~/.virtualenvs/postmkvirtualenv - -Create a virtual environment (named `programming-course`, but you could choose -any name here): - - mkvirtualenv programming-course - -Install IPython: - - pip install ipython - -Install some of the other package we'll use: - - pip install pyzmq tornado jinja2 pygments sphinx markdown nose - pip install numpy - pip install matplotlib - pip install biopython - -Define a default matplotlib backend: - - mkdir -p ~/.matplotlib - echo "backend : GTKCairo" >> ~/.matplotlib/matplotlibrc - - -Mac OSX Mountain Lion ---------------------- - -Install -[Xcode from the App Store](https://itunes.apple.com/us/app/xcode/id497799835?ls=1&mt=12 -Xcode from the App Store). Start Xcode and install the device support -(Preferences -> Downloads). - -Install Xcode command line tools: - - ruby -e "$(curl -fsSL https://raw.github.com/mxcl/homebrew/go)" - brew doctor - xcodebuild -license # accept license - -Add user `bin`, and local Python to your `$PATH`: - - echo 'export PATH="~/bin:/usr/local/share/python:/usr/local/bin:$PATH"' > .bash_profile - . .bash_profile - -We need some system packages: - - brew install python --with-brewed-openssl - brew install gfortran - -Install [virtualenv](http://www.virtualenv.org/) and -[virtualenvwrapper](http://virtualenvwrapper.readthedocs.org/) using -[Virtualenv Burrito](https://github.com/brainsik/virtualenv-burrito): - - curl -s https://raw.github.com/brainsik/virtualenv-burrito/master/virtualenv-burrito.sh | $SHELL - source .venvburrito/startup.sh - -Create a virtual environment (named `programming-course`, but you could choose -any name here): - - mkvirtualenv programming-course - -Install IPython (version 1.0): - - pip install -e git+https://github.com/ipython/ipython#egg=ipython - # or after its 1.0 release: pip install ipython - -Install some of the other package we'll use: - - pip install pyzmq tornado jinja2 pygments sphinx markdown nose - pip install numpy - pip install matplotlib - pip install biopython +Software installation +===================== + +The following guide gets you a virtual environment with all the necessary +packages installed. + + +Linux +----- + +We assume Ubuntu (12.04 Quantal Quetzal or later) or Debian Linux (7.0 Wheezy +or later), but if you manage to install everything on a different flavour +that's also fine. + +You can [download Ubuntu here](http://www.ubuntu.com/) and either install it +directly on your machine, or run it inside +[VirtualBox](https://www.virtualbox.org/). + +Python version >= 2.7.3 and < 3.0 is required. This is installed by default on +Ubuntu and Debian Linux. Note that we use Python 2, *not* Python 3. + +We need some system packages to be installed. For the following command, you +need sudo rights: + + sudo apt-get install -y \ + curl python-qt4 libfreetype6-dev libpng12-dev python-cairo \ + python-gtk2 python-gtk2-dev git gfortran + +From here on, everything is local for the current user. + +Install [virtualenv](http://www.virtualenv.org/) and +[virtualenvwrapper](http://virtualenvwrapper.readthedocs.org/) using +[Virtualenv Burrito](https://github.com/brainsik/virtualenv-burrito): + + curl -sL https://raw.github.com/brainsik/virtualenv-burrito/master/virtualenv-burrito.sh | $SHELL + source ~/.venvburrito/startup.sh + +Automatically +[link PyGTK/Pycairo/PyQt system packages](https://gist.github.com/martijnvermaat/6111396/) +into our virtual environments: + + curl -sL https://gist.github.com/martijnvermaat/6111396/raw/postmkvirtualenv > ~/.virtualenvs/postmkvirtualenv + +Create a virtual environment (named `programming-course`, but you could choose +any name here): + + mkvirtualenv programming-course + +Install IPython: + + pip install ipython + +Install some of the other package we'll use: + + pip install pyzmq tornado jinja2 pygments sphinx markdown nose + pip install numpy + pip install matplotlib + pip install biopython + +Define a default matplotlib backend: + + mkdir -p ~/.matplotlib + echo "backend : GTKCairo" >> ~/.matplotlib/matplotlibrc + + +Mac OSX Mountain Lion +--------------------- + +Install +[Xcode from the App Store](https://itunes.apple.com/us/app/xcode/id497799835?ls=1&mt=12 +Xcode from the App Store). Start Xcode and install the device support +(Preferences -> Downloads). + +Install Xcode command line tools: + + ruby -e "$(curl -fsSL https://raw.github.com/mxcl/homebrew/go)" + brew doctor + xcodebuild -license # accept license + +Add user `bin`, and local Python to your `$PATH`: + + echo 'export PATH="~/bin:/usr/local/share/python:/usr/local/bin:$PATH"' > .bash_profile + . .bash_profile + +We need some system packages: + + brew install python --with-brewed-openssl + brew install gfortran + +Install [virtualenv](http://www.virtualenv.org/) and +[virtualenvwrapper](http://virtualenvwrapper.readthedocs.org/) using +[Virtualenv Burrito](https://github.com/brainsik/virtualenv-burrito): + + curl -s https://raw.github.com/brainsik/virtualenv-burrito/master/virtualenv-burrito.sh | $SHELL + source .venvburrito/startup.sh + +Create a virtual environment (named `programming-course`, but you could choose +any name here): + + mkvirtualenv programming-course + +Install IPython (version 1.0): + + pip install -e git+https://github.com/ipython/ipython#egg=ipython + # or after its 1.0 release: pip install ipython + +Install some of the other package we'll use: + + pip install pyzmq tornado jinja2 pygments sphinx markdown nose + pip install numpy + pip install matplotlib + pip install biopython \ No newline at end of file -- GitLab