diff --git a/phylogenetic_reconstruction/DellBlade4.png b/phylogenetic_reconstruction/DellBlade4.png
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+++ b/phylogenetic_reconstruction/DellBlade4.png
@@ -0,0 +1 @@
+../presentation-pics/pics/DellBlade4.png
\ No newline at end of file
diff --git a/phylogenetic_reconstruction/PhylogenIconI.jpg b/phylogenetic_reconstruction/PhylogenIconI.jpg
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+../presentation-pics/pics/PhylogenyIconI.jpg
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diff --git a/phylogenetic_reconstruction/make_pipeline.png b/phylogenetic_reconstruction/make_pipeline.png
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+../presentation-pics/pics/make_pipeline.png
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diff --git a/phylogenetic_reconstruction/phylo_tree.png b/phylogenetic_reconstruction/phylo_tree.png
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+../presentation-pics/pics/phylo_tree.png
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diff --git a/phylogenetic_reconstruction/phylogenetic_reconstruction.tex b/phylogenetic_reconstruction/phylogenetic_reconstruction.tex
index 2a19d7d428a97a743ae7f56f98e96d118eadc101..57060a165a6bc966e15a1b2e1049f5198e706168 100644
--- a/phylogenetic_reconstruction/phylogenetic_reconstruction.tex
+++ b/phylogenetic_reconstruction/phylogenetic_reconstruction.tex
@@ -29,8 +29,22 @@
 \bodytemplate
 
 % First page of the presentation.
+\section{Introduction}
+\subsection{The project}
+\begin{pframe}
+  \begin{itemize}
+    \item Refactor a Sanger phylogenetic workflow
+    \item Collaboration with Wilco Knetsch
+    \item Ongoing work
+  \end{itemize}
+  \begin{figure}
+    \centering
+    \includegraphics[width=0.55\textwidth]{phylo_tree}
+  \end{figure}
+\end{pframe}
+
 \section{Material}
-\subsection{Input and goal}
+\subsection{Input and problem}
 \begin{pframe}
   \begin{itemize}
     \item Sequence data available for different strains of bacteria
@@ -47,14 +61,6 @@ the field of phylogenetic reconstruction.
 \end{pframe}
 
 \section{Methods}
-\subsection{Naive approach}
-\begin{pframe}
-  \begin{figure}
-    \centering
-    \includegraphics[width=0.75\textwidth]{previous}
-  \end{figure}
-\end{pframe}
-
 \subsection{Naive approach}
 \begin{pframe}
   Early workflow adapted from Sanger suffered from some limitations:
@@ -71,6 +77,14 @@ the field of phylogenetic reconstruction.
   \end{itemize}
 \end{pframe}
 
+\subsection{Naive approach}
+\begin{pframe}
+  \begin{figure}
+    \centering
+    \includegraphics[width=0.75\textwidth]{previous}
+  \end{figure}
+\end{pframe}
+
 \subsection{From bundle of scripts to pipeline}
 \begin{pframe}
   Re-factor the workflow into a complete pipeline
@@ -80,7 +94,7 @@ the field of phylogenetic reconstruction.
     \item Convert the workflow to an automated pipeline
     \item Replace custom scripts with maintained existing tools and methods
     \item Include cluster support
-    \item Improve usability and customization 
+    \item Improve (re-)usability and customization 
   \end{itemize}
 \end{pframe}
 
@@ -135,9 +149,21 @@ the field of phylogenetic reconstruction.
     \begin{itemize}
       \item Not reinventing the wheel, outsource support for tools
     \end{itemize}
+    \begin{figure}
+      \centering
+      \includegraphics[width=0.6\textwidth]{DellBlade4}
+    \end{figure}
   \end{itemize}
 \end{pframe}
 
+\subsection{The code}
+\begin{pframe}
+  \begin{figure}
+    \centering
+    \includegraphics[width=0.8\textwidth]{make_pipeline}
+  \end{figure}
+\end{pframe}
+
 \section{Future work}
 \subsection{Possible expansions}
 \begin{pframe}
@@ -146,6 +172,7 @@ the field of phylogenetic reconstruction.
     \begin{itemize}
       \item User friendly interface 
       \item More automation
+      \item Setup a data compendium
     \end{itemize}
     \bigskip
 
@@ -160,6 +187,7 @@ the field of phylogenetic reconstruction.
 \begin{pframe}
   \begin{itemize}
     \item Calculate distance between samples based on occurrences of words of length k
+    \item Dimension reduction to create distance plots
   \end{itemize}
   \begin{figure}
     \centering
@@ -167,6 +195,14 @@ the field of phylogenetic reconstruction.
   \end{figure}
 \end{pframe}
 
+\subsection{More tools}
+\begin{pframe}
+  \begin{figure}
+    \centering
+    \includegraphics[width=0.90\textwidth]{PhylogenIconI}
+  \end{figure}
+\end{pframe}
+
 \section{Conclusion}
 \begin{pframe}
   Summarizing: