use cases cleaned up

usecases/README.md

@@ -5,18 +5,18 @@
   - members (users who have access to the projects; full, read-only, comment, etc)
   - groups (groups of users; share access rights and namespaces)
   - demo how to create a new project (note shell commands to connect to the repository)
-- `README.md` file:
+- standard `README.md` file:
   - editing in the browser
   - [markdown](https://github.com/adam-p/markdown-here/wiki/Markdown-Cheatsheet) language
+  - previewing changes
   - commiting changes
-  - checking changes
-  - checking commit log and graph [[real example](https://git.lumc.nl/biopet/biopet/network/develop)]
-  - project skeletons
-- _use case:_ writing minutes of a meeting
-- _use case:_ bioinformatics analysis:
-  - integration with [Rstudio](https://www.rstudio.com/):
-    - example report in R/[Rmarkdown](http://rmarkdown.rstudio.com/)
-  - interaction with collaborators:
-    - delivering reports through GitLab
-    - [tagging](https://git-scm.com/book/en/v2/Git-Basics-Tagging) repository states
-    - requesting changes ([issues](http://doc.gitlab.com/ce/gitlab-basics/create-issue.html))
\ No newline at end of file
+- project graph:
+  - checking commit log and graph [[internal example](https://git.lumc.nl/biopet/biopet/network/develop)]
+  - [tagging](https://git-scm.com/book/en/v2/Git-Basics-Tagging) repository states
+- _use case:_ writing minutes of a meeting [[internal example](https://git.lumc.nl/TFA_eLoket/TFA_eLoket)]
+- _use case:_ bioinformatics analysis (delivering reports through GitLab):
+  - [example report](https://git.lumc.nl/sasc/project-165-faireseq)
+  - [source](https://git.lumc.nl/sasc/project-165-faireseq/blob/master/analysis/bin_normalization/bin_normalization.Rmd) written in R/[Rmarkdown](http://rmarkdown.rstudio.com/)
+  - integration with [Rstudio](https://www.rstudio.com/)
+  - requesting changes ([issues](http://doc.gitlab.com/ce/gitlab-basics/create-issue.html))
+- _use case:_ [R course](https://git.lumc.nl/bce_core/R_course_2015_Jun)