Merge requests · biowdl / tasks · GitLab

Star

!2 · created Mar 15, 2018 by Ruben Vorderman
- Merged
updated Mar 15, 2018
Added more structs

!52 · created Aug 22, 2018 by Ruben Vorderman develop
- Merged
updated Aug 22, 2018
Move all picard tasks to containers.

!90 · created Feb 19, 2019 by Ruben Vorderman develop
- Merged
updated Feb 19, 2019
added fastq pair struct

!60 · created Sep 04, 2018 by Ruben Vorderman develop
- Merged
updated Sep 04, 2018
remove link creation from CombineGVCFs

!63 · created Sep 24, 2018 by Ruben Vorderman develop
- Merged
updated Sep 24, 2018
Added CaseControl tool

!64 · created Sep 26, 2018 by Ruben Vorderman develop
- Merged
- 4
updated Sep 27, 2018
Add seqstat generate. ValidateFastq now validates files.

!53 · created Aug 23, 2018 by Ruben Vorderman develop
- Merged
updated Aug 23, 2018
fix regex in slitNCigarReads

!44 · created Aug 15, 2018 by Ruben Vorderman develop
- Merged
updated Aug 15, 2018
Changes for somatic variantcalling

!45 · created Aug 16, 2018 by Ruben Vorderman develop
- Merged
updated Aug 16, 2018
fix somatic tasks and add supporting tasks

!43 · created Aug 03, 2018 by Ruben Vorderman develop
- Merged
- 6
updated Aug 09, 2018
add BedTOIntervalList

!55 · created Aug 23, 2018 by Ruben Vorderman develop
- Merged
updated Aug 23, 2018
Macs2

!39 · created Jul 26, 2018 by Ruben Vorderman develop
- Merged
updated Jul 26, 2018
allow for additional annotations to be added into mergecounts output

!89 · created Feb 14, 2019 by Ruben Vorderman develop
- Merged
- 1
updated Feb 25, 2019
Dockerize GATK. Scattering now works with containers. Tabix another docker image.

!92 · created Feb 20, 2019 by Ruben Vorderman develop
- Merged
- 9
updated Feb 21, 2019
Allow stringtie to skip novel transcripts

!84 · created Dec 13, 2018 by Ruben Vorderman develop
- Merged
updated Dec 13, 2018
Make tasks suitable for running against relative paths.

!85 · created Jan 08, 2019 by Ruben Vorderman develop
- Merged
updated Jan 08, 2019
add outSAMunmapped to star

!81 · created Dec 06, 2018 by Ruben Vorderman develop
- Merged
updated Feb 08, 2019
Fixing names

!66 · created Oct 09, 2018 by Ruben Vorderman develop
- Merged
updated Oct 09, 2018
Adapt sane defaults for human analysis.

!82 · created Dec 06, 2018 by Ruben Vorderman develop
- Merged
updated Dec 07, 2018
add stringtie merge

!83 · created Dec 12, 2018 by Ruben Vorderman develop
- Merged
updated Dec 12, 2018

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