Merge requests · biowdl / tasks

added fastq pair struct

!60 · created Sep 04, 2018 by Ruben Vorderman develop
- Merged
updated Sep 04, 2018
Fixed -U arg

!59 · created Sep 03, 2018 by Ruben Vorderman develop
- Merged
updated Sep 03, 2018
Fixing small issues

!58 · created Sep 03, 2018 by Ruben Vorderman develop
- Merged
- 4
updated Sep 03, 2018
Fixed defaults

!57 · created Aug 29, 2018 by Ruben Vorderman develop
- Merged
- 2
updated Aug 29, 2018
Switch bwa index to struct

!56 · created Aug 29, 2018 by Ruben Vorderman develop
- Merged
- 1
updated Aug 29, 2018
Added alt post script

!54 · created Aug 23, 2018 by Ruben Vorderman develop
- Merged
- 2
updated Aug 28, 2018
add BedTOIntervalList

!55 · created Aug 23, 2018 by Ruben Vorderman develop
- Merged
updated Aug 23, 2018
Add seqstat generate. ValidateFastq now validates files.

!53 · created Aug 23, 2018 by Ruben Vorderman develop
- Merged
updated Aug 23, 2018
Add samplesheet structs

!37 · created Jul 25, 2018 by Ruben Vorderman develop
- Merged
updated Aug 22, 2018
Added more structs

!52 · created Aug 22, 2018 by Ruben Vorderman develop
- Merged
updated Aug 22, 2018
Fixing outputs

!51 · created Aug 21, 2018 by Ruben Vorderman develop
- Merged
updated Aug 21, 2018
Added sctruct for index files

!50 · created Aug 20, 2018 by Ruben Vorderman develop
- Merged
updated Aug 21, 2018
add output to VcfStats

!49 · created Aug 20, 2018 by Ruben Vorderman develop
- Merged
- 1
updated Aug 20, 2018
Added Cromwell array tool

!48 · created Aug 20, 2018 by Ruben Vorderman develop
- Merged
- 2
updated Aug 20, 2018
Fix fastqc and cutadapt for use with WDL 1.0

!47 · created Aug 20, 2018 by Ruben Vorderman develop
- Merged
- 1
updated Aug 20, 2018
fix outputs for metrics picard metrics

!46 · created Aug 17, 2018 by Ruben Vorderman develop
- Merged
updated Aug 17, 2018
Changes for somatic variantcalling

!45 · created Aug 16, 2018 by Ruben Vorderman develop
- Merged
updated Aug 16, 2018
fix regex in slitNCigarReads

!44 · created Aug 15, 2018 by Ruben Vorderman develop
- Merged
updated Aug 15, 2018
fix somatic tasks and add supporting tasks

!43 · created Aug 03, 2018 by Ruben Vorderman develop
- Merged
- 6
updated Aug 09, 2018
Add Various new tasks 4 of 4 checklist items completed

!40 · created Jul 27, 2018 by Ruben Vorderman develop
- Merged
- 2
updated Jul 31, 2018