tasks merge requests
https://git.lumc.nl/biowdl/tasks/-/merge_requests
2018-03-15T16:04:47+01:00
https://git.lumc.nl/biowdl/tasks/-/merge_requests/2
Star
2018-03-15T16:04:47+01:00
Ruben Vorderman
Star
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/52
Added more structs
2018-08-22T13:06:48+02:00
Ruben Vorderman
Added more structs
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/90
Move all picard tasks to containers.
2019-02-19T16:34:08+01:00
Ruben Vorderman
Move all picard tasks to containers.
https://git.lumc.nl/biowdl/tasks/-/merge_requests/60
added fastq pair struct
2018-09-04T11:28:54+02:00
Ruben Vorderman
added fastq pair struct
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/63
remove link creation from CombineGVCFs
2018-09-24T16:58:40+02:00
Ruben Vorderman
remove link creation from CombineGVCFs
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/64
Added CaseControl tool
2018-09-27T11:53:13+02:00
Ruben Vorderman
Added CaseControl tool
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/53
Add seqstat generate. ValidateFastq now validates files.
2018-08-23T13:41:22+02:00
Ruben Vorderman
Add seqstat generate. ValidateFastq now validates files.
https://git.lumc.nl/biowdl/tasks/-/merge_requests/44
fix regex in slitNCigarReads
2018-08-15T16:37:42+02:00
Ruben Vorderman
fix regex in slitNCigarReads
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/45
Changes for somatic variantcalling
2018-08-16T16:52:18+02:00
Ruben Vorderman
Changes for somatic variantcalling
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/43
fix somatic tasks and add supporting tasks
2018-08-09T11:37:20+02:00
Ruben Vorderman
fix somatic tasks and add supporting tasks
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/55
add BedTOIntervalList
2018-08-23T16:02:36+02:00
Ruben Vorderman
add BedTOIntervalList
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/39
Macs2
2018-07-26T16:03:27+02:00
Ruben Vorderman
Macs2
*Created by: johnmous*
*Created by: johnmous*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/89
allow for additional annotations to be added into mergecounts output
2019-02-25T10:05:26+01:00
Ruben Vorderman
allow for additional annotations to be added into mergecounts output
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/92
Dockerize GATK. Scattering now works with containers. Tabix another docker im...
2019-02-21T13:25:46+01:00
Ruben Vorderman
Dockerize GATK. Scattering now works with containers. Tabix another docker image.
https://git.lumc.nl/biowdl/tasks/-/merge_requests/84
Allow stringtie to skip novel transcripts
2018-12-13T14:53:10+01:00
Ruben Vorderman
Allow stringtie to skip novel transcripts
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/85
Make tasks suitable for running against relative paths.
2019-01-08T13:55:27+01:00
Ruben Vorderman
Make tasks suitable for running against relative paths.
Many paths were using string instead of file.
Many paths were using string instead of file.
https://git.lumc.nl/biowdl/tasks/-/merge_requests/81
add outSAMunmapped to star
2019-02-08T10:37:27+01:00
Ruben Vorderman
add outSAMunmapped to star
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/66
Fixing names
2018-10-09T10:09:03+02:00
Ruben Vorderman
Fixing names
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/82
Adapt sane defaults for human analysis.
2018-12-07T14:34:50+01:00
Ruben Vorderman
Adapt sane defaults for human analysis.
https://git.lumc.nl/biowdl/tasks/-/merge_requests/83
add stringtie merge
2018-12-12T17:09:37+01:00
Ruben Vorderman
add stringtie merge
*Created by: DavyCats*
*Created by: DavyCats*