tasks merge requests
https://git.lumc.nl/biowdl/tasks/-/merge_requests
2018-09-04T11:28:54+02:00
https://git.lumc.nl/biowdl/tasks/-/merge_requests/60
added fastq pair struct
2018-09-04T11:28:54+02:00
Ruben Vorderman
added fastq pair struct
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/61
Switch to structs
2018-09-18T11:24:07+02:00
Ruben Vorderman
Switch to structs
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/56
Switch bwa index to struct
2018-08-29T13:12:11+02:00
Ruben Vorderman
Switch bwa index to struct
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/58
Fixing small issues
2018-09-03T12:46:11+02:00
Ruben Vorderman
Fixing small issues
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/57
Fixed defaults
2018-08-29T16:14:57+02:00
Ruben Vorderman
Fixed defaults
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/55
add BedTOIntervalList
2018-08-23T16:02:36+02:00
Ruben Vorderman
add BedTOIntervalList
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/54
Added alt post script
2018-08-28T14:53:09+02:00
Ruben Vorderman
Added alt post script
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/53
Add seqstat generate. ValidateFastq now validates files.
2018-08-23T13:41:22+02:00
Ruben Vorderman
Add seqstat generate. ValidateFastq now validates files.
https://git.lumc.nl/biowdl/tasks/-/merge_requests/52
Added more structs
2018-08-22T13:06:48+02:00
Ruben Vorderman
Added more structs
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/51
Fixing outputs
2018-08-21T12:29:27+02:00
Ruben Vorderman
Fixing outputs
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/47
Fix fastqc and cutadapt for use with WDL 1.0
2018-08-20T10:48:57+02:00
Ruben Vorderman
Fix fastqc and cutadapt for use with WDL 1.0
https://git.lumc.nl/biowdl/tasks/-/merge_requests/50
Added sctruct for index files
2018-08-21T10:00:20+02:00
Ruben Vorderman
Added sctruct for index files
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/49
add output to VcfStats
2018-08-20T16:17:26+02:00
Ruben Vorderman
add output to VcfStats
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/48
Added Cromwell array tool
2018-08-20T15:44:06+02:00
Ruben Vorderman
Added Cromwell array tool
*Created by: ffinfo*
*Created by: ffinfo*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/42
typo
2018-07-27T13:21:22+02:00
Ruben Vorderman
typo
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/45
Changes for somatic variantcalling
2018-08-16T16:52:18+02:00
Ruben Vorderman
Changes for somatic variantcalling
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/46
fix outputs for metrics picard metrics
2018-08-17T10:54:51+02:00
Ruben Vorderman
fix outputs for metrics picard metrics
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/43
fix somatic tasks and add supporting tasks
2018-08-09T11:37:20+02:00
Ruben Vorderman
fix somatic tasks and add supporting tasks
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/44
fix regex in slitNCigarReads
2018-08-15T16:37:42+02:00
Ruben Vorderman
fix regex in slitNCigarReads
*Created by: DavyCats*
*Created by: DavyCats*
https://git.lumc.nl/biowdl/tasks/-/merge_requests/41
fix type of R2_md5 (String to String?)
2018-07-27T11:33:32+02:00
Ruben Vorderman
fix type of R2_md5 (String to String?)
*Created by: DavyCats*
*Created by: DavyCats*