diff --git a/fastqc.wdl b/fastqc.wdl index e526c1e9432df7c924ac4aaf063867c242c58cf3..968c4a49ffb2dee7b4025d533856080d76585f09 100644 --- a/fastqc.wdl +++ b/fastqc.wdl @@ -70,7 +70,7 @@ task extractAdapters { command { set -e mkdir -p ${outputDir} - java -Xmx$${true=""+memory false="4" defined(memory)}G -jar ${extractAdaptersFastqcJar} \ + java -Xmx${true=""+memory false="4" defined(memory)}G -jar ${extractAdaptersFastqcJar} \ --inputFile ${inputFile} \ ${"--adapterOutputFile " + adapterOutputFilePath } \ ${"--contamsOutputFile " + contamsOutputFilePath } \