From fadb90174c142fe6cb6191c231cee2fa1eb8db05 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 24 Jun 2019 13:33:06 +0200
Subject: [PATCH] Markduplicates dockerimage
---
picard.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/picard.wdl b/picard.wdl
index 9f42acb..509b7d1 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -280,7 +280,7 @@ task MarkDuplicates {
Int memory = 8
Float memoryMultiplier = 3.0
- String dockerTag = "2.18.26--0"
+ String dockerImage = "quay.io/biocontainers/picard:2.18.26--0"
# The program default for READ_NAME_REGEX is appropriate in nearly every case.
# Sometimes we wish to supply "null" in order to turn off optical duplicate detection
@@ -319,7 +319,7 @@ task MarkDuplicates {
}
runtime {
- docker: "quay.io/biocontainers/picard:" + dockerTag
+ docker: dockerImage
memory: ceil(memory * memoryMultiplier)
}
}
--
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