diff --git a/bwa.wdl b/bwa.wdl index fb222adf1bae6eeb01d14232a4a6dfe953858d79..a95bb25441cb43823cff7aee5975b7f2782721b6 100644 --- a/bwa.wdl +++ b/bwa.wdl @@ -6,7 +6,7 @@ task mem { String? outputFile = "aligned.bam" String? preCommand Int? threads = 1 - String? memory = "4G" + Int? memory = 4 Int? minimumSeedLength Int? w Int? d diff --git a/cutadapt.wdl b/cutadapt.wdl index 4eb8b1b8d04555d30dd224229a7309adba10bc56..6e6cd56aa2b028c9c18f08b20c60d162d1cf71f6 100644 --- a/cutadapt.wdl +++ b/cutadapt.wdl @@ -6,7 +6,7 @@ task cutadapt { String? format String? preCommand Int? cores = 1 - String? memory = "4G" + Int? memory = 4 Array[String]+? adapter Array[String]+? front Array[String]+? anywhere @@ -122,4 +122,4 @@ task cutadapt { cpu: select_first([cores]) memory: select_first([memory]) } -} \ No newline at end of file +} diff --git a/spades.wdl b/spades.wdl index 8c97c6397b06b9bac528ac18069d05a67c0a4cac..5a8ab2808c2be119253cb324ee9f3a20c1764998 100644 --- a/spades.wdl +++ b/spades.wdl @@ -74,6 +74,6 @@ task spades { } runtime { cpu: select_first([threads]) - memory: select_first([memoryGb]) + "G" + memory: select_first([memoryGb]) } } \ No newline at end of file