From f7d97af61a783e38a45c0c17863db604bc4d2ff8 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 4 Apr 2018 13:05:43 +0200
Subject: [PATCH] add Xmx to sampleConfig
---
biopet.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet.wdl b/biopet.wdl
index d394bd5..2868f0c 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -62,7 +62,7 @@ task SampleConfig {
set -e -o pipefail
${preCommand}
mkdir -p . ${"$(dirname " + jsonOutputPath + ")"} ${"$(dirname " + tsvOutputPath + ")"}
- java -jar ${tool_jar} \
+ java -Xmx2G -jar ${tool_jar} \
-i ${sep="-i " inputFiles} \
${"--sample " + sample} \
${"--library " + library} \
--
GitLab