diff --git a/biopet.wdl b/biopet.wdl index d394bd586b108211da33720f4a6ea64cb854a95a..2868f0c2692b13dba51e1aad2dd64cb4470b9db0 100644 --- a/biopet.wdl +++ b/biopet.wdl @@ -62,7 +62,7 @@ task SampleConfig { set -e -o pipefail ${preCommand} mkdir -p . ${"$(dirname " + jsonOutputPath + ")"} ${"$(dirname " + tsvOutputPath + ")"} - java -jar ${tool_jar} \ + java -Xmx2G -jar ${tool_jar} \ -i ${sep="-i " inputFiles} \ ${"--sample " + sample} \ ${"--library " + library} \