From f6bf488f35382c6a21095756a96b50fd54b4d818 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 22 Jul 2020 17:09:41 +0200
Subject: [PATCH] correct memory selection
---
hisat2.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/hisat2.wdl b/hisat2.wdl
index a86214f..f9a4bc5 100644
--- a/hisat2.wdl
+++ b/hisat2.wdl
@@ -81,7 +81,7 @@ task Hisat2 {
}
runtime {
- memory: "~{estimatedMemoryGb}G"
+ memory: "~{select_first([memoryGb, estimatedMemoryGb])}G"
cpu: threads
time_minutes: timeMinutes
docker: dockerImage
--
GitLab