diff --git a/gatk.wdl b/gatk.wdl index 4458d60544035b21c4a3dfd5fcd6fd3682baed35..87fa1046be22020b0a7b37b638d6c30084c43519 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -258,6 +258,7 @@ task MuTect2 { String outputVcf String tumorSample String? normalSample + File? panelOfNormals Array[File]+ intervals Int memory = 4 @@ -274,6 +275,7 @@ task MuTect2 { -I ~{sep=" -I " inputBams} \ -tumor ~{tumorSample} \ ~{"-normal " + normalSample} \ + ~{"--panel-of-normals " + panelOfNormals} \ -O ~{outputVcf} \ -L ~{sep=" -L " intervals} }