diff --git a/htseq.wdl b/htseq.wdl index dfa3fcf2005c1dd266932abbd559a379c09217f4..ef4ae0a3e071e5dc64445428b0827cf82f3e6667 100644 --- a/htseq.wdl +++ b/htseq.wdl @@ -23,6 +23,7 @@ version 1.0 task HTSeqCount { input { Array[File]+ inputBams + Array[File]+ inputBamIndexes File gtfFile String outputTable = "output.tsv" String order = "pos" @@ -34,7 +35,7 @@ task HTSeqCount { Int nprocesses = 1 String memory = "8G" - Int timeMinutes = 10 + ceil(size(inputBams, "G") * 60) + Int timeMinutes = 1440 #10 + ceil(size(inputBams, "G") * 60) FIXME String dockerImage = "quay.io/biocontainers/htseq:0.12.4--py37hb3f55d8_0" }