From f423e53e31ba53ec6db7ba5aad244b51ea28e6db Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Tue, 21 Apr 2020 09:31:38 +0200
Subject: [PATCH] Add GC parameter.
---
picard.wdl | 1 +
1 file changed, 1 insertion(+)
diff --git a/picard.wdl b/picard.wdl
index 2a0121d..b78e603 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -328,6 +328,7 @@ task CreateSequenceDictionary {
set -e
mkdir -p "$(dirname ~{outputDir})"
picard -Xmx~{javaXmx} \
+ -XX:ParallelGCThreads=1 \
CreateSequenceDictionary \
REFERENCE=~{inputFile} \
OUTPUT="~{outputDir}/~{basenameInputFile}.dict"
--
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