From efb8bc226b3c9dbfce9080ae68d6e0e8ba7e2989 Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Tue, 24 Mar 2020 13:45:49 +0100
Subject: [PATCH] Update output names.
---
isoseq3.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/isoseq3.wdl b/isoseq3.wdl
index 9d5f217..ff6e336 100644
--- a/isoseq3.wdl
+++ b/isoseq3.wdl
@@ -65,8 +65,8 @@ task Refine {
>>>
output {
- Array[File] outputFLfile = glob("~{basename(outputPrefix)}*.bam")
- Array[File] outputFLindexFile = glob("~{basename(outputPrefix)}*.bam.pbi")
+ Array[File] outputFLNCfile = glob("~{basename(outputPrefix)}*.bam")
+ Array[File] outputFLNCindexFile = glob("~{basename(outputPrefix)}*.bam.pbi")
Array[File] outputConsensusReadsetFile = glob("~{basename(outputPrefix)}*.consensusreadset.xml")
Array[File] outputFilterSummaryFile = glob("~{basename(outputPrefix)}*.filter_summary.json")
Array[File] outputReportFile = glob("~{basename(outputPrefix)}*.report.csv")
--
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