diff --git a/isoseq3.wdl b/isoseq3.wdl
index 9d5f217e2430ac36de649dbbd18ef382f2a77c6c..ff6e33680ce9f5d58663502d898cab943eb08139 100644
--- a/isoseq3.wdl
+++ b/isoseq3.wdl
@@ -65,8 +65,8 @@ task Refine {
     >>>
 
     output {
-        Array[File] outputFLfile = glob("~{basename(outputPrefix)}*.bam")
-        Array[File] outputFLindexFile = glob("~{basename(outputPrefix)}*.bam.pbi")
+        Array[File] outputFLNCfile = glob("~{basename(outputPrefix)}*.bam")
+        Array[File] outputFLNCindexFile = glob("~{basename(outputPrefix)}*.bam.pbi")
         Array[File] outputConsensusReadsetFile = glob("~{basename(outputPrefix)}*.consensusreadset.xml")
         Array[File] outputFilterSummaryFile = glob("~{basename(outputPrefix)}*.filter_summary.json")
         Array[File] outputReportFile = glob("~{basename(outputPrefix)}*.report.csv")