diff --git a/unicycler.wdl b/unicycler.wdl new file mode 100644 index 0000000000000000000000000000000000000000..dac7899ca52951b37f0e011d804cc8d2a6e602c4 --- /dev/null +++ b/unicycler.wdl @@ -0,0 +1,30 @@ +task unicycler { + String? preCommand + File short1 + File short2 + File? unpaired + File? long + String out + Int? minFastaLength + Int? keep + Boolean? vcf + Int? threads = 1 + Int? memory = 4 + String? mode + Int? linearSeqs + Int? verbosity + command { + set -e -o pipefail + mkdir -p ${out} + ${preCommand} + unicycler \ + --short1 ${short1} + --short2 ${short2} + + } + + runtime { + cpu: select_first([threads]) + memory: select_first([memory]) + } +} \ No newline at end of file