From ee708b8ea82f9b6d4522dab54f980013f1b9d6a4 Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Tue, 14 Apr 2020 10:34:31 +0200
Subject: [PATCH] Isoseq3 requires more memory by default.
---
CHANGELOG.md | 1 +
isoseq3.wdl | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3dfe8b8..00113ca 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -10,6 +10,7 @@ that users understand how the changes affect the new version.
-->
version 3.1.0
---------------------------
++ Isoseq3: Required more memory for common datasets.
+ Isoseq3: Remove cp commands and other bash magic, file naming is now solved by pipeline.
+ Lima: Replace mv command with cp.
+ Add WDL task for smoove (lumpy) sv-caller.
diff --git a/isoseq3.wdl b/isoseq3.wdl
index 44005a4..007aa00 100644
--- a/isoseq3.wdl
+++ b/isoseq3.wdl
@@ -31,7 +31,7 @@ task Refine {
String outputNamePrefix
Int cores = 2
- String memory = "1G"
+ String memory = "2G"
String dockerImage = "quay.io/biocontainers/isoseq3:3.3.0--0"
}
--
GitLab