diff --git a/picard.wdl b/picard.wdl index ea11a270ca5afa0cd127d1cf12b11c1b72f1e3d7..f1f0772354460e50c60bc2491cda9c9ff593b90e 100644 --- a/picard.wdl +++ b/picard.wdl @@ -574,7 +574,7 @@ task SortVcf { String memory = "24G" String javaXmx = "8G" String dockerImage = "quay.io/biocontainers/picard:2.20.5--0" - } + } command { @@ -596,4 +596,16 @@ task SortVcf { docker: dockerImage memory: memory } + + parameter_meta { + vcfFiles: {description: "The VCF files to merge and sort.", category: "required"} + outputVcfPath: {description: "The location the sorted VCF files should be written to.", category: "required"} + dict: {description: "A sequence dictionary matching the VCF files.", category: "advanced"} + + memory: {description: "The amount of memory this job will use.", category: "advanced"} + javaXmx: {description: "The maximum memory available to the program. Should be lower than `memory` to accommodate JVM overhead.", + category: "advanced"} + dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", + category: "advanced"} + } } \ No newline at end of file