From eba0865e6865217ed34de9e04ac0f4c1b86f9435 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Fri, 11 Feb 2022 17:11:34 +0100
Subject: [PATCH] Run stuff directly in bash
---
.github/workflows/lint.yml | 34 ++++++++++++++--------------------
1 file changed, 14 insertions(+), 20 deletions(-)
diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index 11bf7a4..61e3d99 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -66,30 +66,24 @@ jobs:
# Only check files that have changed from the base reference.
# Womtool validate checks very slowly, so this saves a lot of time.
run: |
- bash <<- SCRIPT
- set -x
- for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
- womtool validate $WDL_FILE
- done
- SCRIPT
+ set -x
+ for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
+ womtool validate $WDL_FILE
+ done
- name: run miniwdl check
run: bash -c 'miniwdl check $(git ls-files *.wdl)'
- name: Check copyright headers
run: |
- bash <<- SCRIPT
- for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
- grep Copyright $WDL_FILE || bash -c "echo No copyright header in $WDL_FILE && exit 1"
- done
- SCRIPT
+ for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
+ grep Copyright $WDL_FILE || bash -c "echo No copyright header in $WDL_FILE && exit 1"
+ done
- name: Check parameter_meta for inputs
run: |
- bash <<- SCRIPT
- for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
- wdl-aid --strict $WDL_FILE > /dev/null 2> wdl-aid_stderr ||
- if grep -z 'ValueError: Missing parameter_meta for inputs:' wdl-aid_stderr
- then
- exit 1
- fi
- done
- SCRIPT
+ for WDL_FILE in $(git diff --name-only origin/${{github.base_ref}} | grep -E '*.wdl$'); do
+ wdl-aid --strict $WDL_FILE > /dev/null 2> wdl-aid_stderr ||
+ if grep -z 'ValueError: Missing parameter_meta for inputs:' wdl-aid_stderr
+ then
+ exit 1
+ fi
+ done
--
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