diff --git a/vardict.wdl b/vardict.wdl index a421fd785abb9f5786cb0c9781f294c5525c60fd..4d80738a0030b9c3ccd75286463500f378c4aa74 100644 --- a/vardict.wdl +++ b/vardict.wdl @@ -37,6 +37,7 @@ task VarDict { -G ~{refFasta} \ -N ~{tumorSampleName} \ -b "~{tumorBam}~{"|" + normalBam}" \ + ~{true="-z" false="" defined(normalBam)} \ -c ~{chromosomeColumn} \ -S ~{startColumn} \ -E ~{endColumn} \