From e87052a739ba2d2ac29cf0dad1cb5ace642f6e8c Mon Sep 17 00:00:00 2001
From: cagaser <c.agaser@lumc.nl>
Date: Wed, 9 Dec 2020 13:26:24 +0100
Subject: [PATCH] add duphold paramater in smoove

---
 smoove.wdl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/smoove.wdl b/smoove.wdl
index d1011f6..7a7e430 100644
--- a/smoove.wdl
+++ b/smoove.wdl
@@ -43,6 +43,7 @@ task Call {
         --fasta ~{referenceFasta} \
         --removepr \
         --genotype \
+        --duphold \
         ~{bamFile}
     }
 
-- 
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