diff --git a/smoove.wdl b/smoove.wdl index d1011f6cd3623e13377af67d000639b1c438bdaa..7a7e4305feabbc043fc443c093366c1982d4f718 100644 --- a/smoove.wdl +++ b/smoove.wdl @@ -43,6 +43,7 @@ task Call { --fasta ~{referenceFasta} \ --removepr \ --genotype \ + --duphold \ ~{bamFile} }