From e10f8acc186b5b5050882bbfb2befc8aadcae875 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 9 May 2018 13:08:14 +0200
Subject: [PATCH] fix output of bwa index task
---
bwa.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/bwa.wdl b/bwa.wdl
index 90b017f..2d9502e 100644
--- a/bwa.wdl
+++ b/bwa.wdl
@@ -53,7 +53,7 @@ task index {
output {
File indexedFasta = outputFile
- Array[File] indexFiles = [indexBase + ".bwt",indexBase + ".pac",indexBase + ".sa",indexBase + ".amb",indexBase + ".ann"]
+ Array[File] indexFiles = [outputFile + ".bwt",outputFile + ".pac",outputFile + ".sa",outputFile + ".amb",outputFile + ".ann"]
}
parameter_meta {
fasta: "Fasta file to be indexed"
--
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