From e0a9e37faa56a704d3fd81b51c9340909175b17c Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Fri, 17 Aug 2018 10:21:42 +0200
Subject: [PATCH] fix outputs
---
picard.wdl | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/picard.wdl b/picard.wdl
index 4132754..7ad7ba7 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -61,8 +61,8 @@ task CollectMultipleMetrics {
File gcBiasDetail = basename + ".gc_bias.detail_metrics"
File gcBiasPdf = basename + ".gc_bias.pdf"
File gcBiasSummary = basename + ".gc_bias.summary_metrics"
- File insertSizeHistogramPdf = basename + ".insert_size_histogram.pdf"
- File insertSize = basename + ".insert_size_metrics"
+ File? insertSizeHistogramPdf = basename + ".insert_size_histogram.pdf"
+ File? insertSize = basename + ".insert_size_metrics"
File preAdapterDetail = basename + ".pre_adapter_detail_metrics"
File preAdapterSummary = basename + ".pre_adapter_summary_metrics"
File qualityByCycle = basename + ".quality_by_cycle_metrics"
@@ -110,7 +110,7 @@ task CollectRnaSeqMetrics {
}
output {
- File chart = basename + ".RNA_Metrics.pdf"
+ File? chart = basename + ".RNA_Metrics.pdf"
File metrics = basename + ".RNA_Metrics"
}
--
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