diff --git a/picard.wdl b/picard.wdl index 4132754149ebcab5e777f2e9d90c4266cc38db4e..7ad7ba7fb4339ffd803214750825754dbc6d549e 100644 --- a/picard.wdl +++ b/picard.wdl @@ -61,8 +61,8 @@ task CollectMultipleMetrics { File gcBiasDetail = basename + ".gc_bias.detail_metrics" File gcBiasPdf = basename + ".gc_bias.pdf" File gcBiasSummary = basename + ".gc_bias.summary_metrics" - File insertSizeHistogramPdf = basename + ".insert_size_histogram.pdf" - File insertSize = basename + ".insert_size_metrics" + File? insertSizeHistogramPdf = basename + ".insert_size_histogram.pdf" + File? insertSize = basename + ".insert_size_metrics" File preAdapterDetail = basename + ".pre_adapter_detail_metrics" File preAdapterSummary = basename + ".pre_adapter_summary_metrics" File qualityByCycle = basename + ".quality_by_cycle_metrics" @@ -110,7 +110,7 @@ task CollectRnaSeqMetrics { } output { - File chart = basename + ".RNA_Metrics.pdf" + File? chart = basename + ".RNA_Metrics.pdf" File metrics = basename + ".RNA_Metrics" }