From d8a159f32dd321b87fd76c1ca4522e109eb5e0fc Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Wed, 22 Jul 2020 12:33:57 +0200
Subject: [PATCH] Fix tests.
---
transcriptclean.wdl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/transcriptclean.wdl b/transcriptclean.wdl
index 1eea686..7966130 100644
--- a/transcriptclean.wdl
+++ b/transcriptclean.wdl
@@ -61,6 +61,7 @@ task GetSJsFromGtf {
memory: {description: "The amount of memory available to the job.", category: "advanced"}
timeMinutes: {description: "The maximum amount of time the job will run in minutes.", category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}
+
# outputs
spliceJunctionFile: {description: "Extracted splice junctions."}
}
@@ -140,7 +141,7 @@ task TranscriptClean {
-g ~{referenceGenome} \
-t ~{cores} \
--maxLenIndel=~{maxLenIndel} \
- --maxSJOffset=~{maxSJoffset} \
+ --maxSJOffset=~{maxSJOffset} \
-o ~{outputPrefix} \
~{true="-m true" false="-m false" correctMismatches} \
~{true="-i true" false="-i false" correctIndels} \
--
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