diff --git a/transcriptclean.wdl b/transcriptclean.wdl index 1eea686c7a7a4a67c3d7036ec2044f1c9858ea99..79661307f13ec5bcd7b68aae6f328874983c4e12 100644 --- a/transcriptclean.wdl +++ b/transcriptclean.wdl @@ -61,6 +61,7 @@ task GetSJsFromGtf { memory: {description: "The amount of memory available to the job.", category: "advanced"} timeMinutes: {description: "The maximum amount of time the job will run in minutes.", category: "advanced"} dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"} + # outputs spliceJunctionFile: {description: "Extracted splice junctions."} } @@ -140,7 +141,7 @@ task TranscriptClean { -g ~{referenceGenome} \ -t ~{cores} \ --maxLenIndel=~{maxLenIndel} \ - --maxSJOffset=~{maxSJoffset} \ + --maxSJOffset=~{maxSJOffset} \ -o ~{outputPrefix} \ ~{true="-m true" false="-m false" correctMismatches} \ ~{true="-i true" false="-i false" correctIndels} \