From d77aee4c03f58b2ca80cbaffa3f66c90e24f8e3d Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Thu, 31 Oct 2019 16:03:09 +0100
Subject: [PATCH] adress comments
---
collect-columns.wdl | 2 +-
cutadapt.wdl | 12 ++++++------
fastqc.wdl | 2 +-
stringtie.wdl | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
diff --git a/collect-columns.wdl b/collect-columns.wdl
index 914c785..263e317 100644
--- a/collect-columns.wdl
+++ b/collect-columns.wdl
@@ -49,7 +49,7 @@ task CollectColumns {
category: "required"
}
outputPath: {
- description: "The path to which the output whould be written.",
+ description: "The path to which the output should be written.",
category: "required"
}
featureColumn: {
diff --git a/cutadapt.wdl b/cutadapt.wdl
index 8dcd93b..571bc88 100644
--- a/cutadapt.wdl
+++ b/cutadapt.wdl
@@ -116,7 +116,7 @@ task Cutadapt {
~{true="--no-trim" false="" noTrim} \
~{true="--mask-adapter" false="" maskAdapter} \
~{true="--no-indels" false="" noIndels} \
- ~{true="--trim-n" false="" trimN} \
+ ~{true="--trim-n" false="" trimN} \
~{true="--interleaved" false="" interleaved} \
~{true="--discard-trimmed" false="" discardTrimmed } \
~{true="--colorspace" false="" colorspace} \
@@ -154,19 +154,19 @@ task Cutadapt {
parameter_meta {
read1: {
- description: "The first or single end FastQ file to be run through cutadapt.",
+ description: "The first or single end fastq file to be run through cutadapt.",
category: "required"
}
read2: {
- description: "An optional second end FastQ file to be run through cutadapt.",
+ description: "An optional second end fastq file to be run through cutadapt.",
category: "common"
}
read1output: {
- description: "The name of the resulting first or single end FastQ file.",
+ description: "The name of the resulting first or single end fastq file.",
category: "common"
}
read2output: {
- description: "The name of the resulting second end FastQ file.",
+ description: "The name of the resulting second end fastq file.",
category: "common"
}
format: {
@@ -242,7 +242,7 @@ task Cutadapt {
category: "advanced"
}
nextseqTrim: {
- description: "Equivalent to cutadapt's --nextseq-trim option.",
+ description: "Equivalent to cutadapt's --nextseq-trim option.",
category: "advanced"
}
qualityCutoff: {
diff --git a/fastqc.wdl b/fastqc.wdl
index a76afa7..931c153 100644
--- a/fastqc.wdl
+++ b/fastqc.wdl
@@ -66,7 +66,7 @@ task Fastqc {
parameter_meta {
seqFile: {
- description: "A FastQ file.",
+ description: "A fastq file.",
category: "required"
}
outdirPath: {
diff --git a/stringtie.wdl b/stringtie.wdl
index b9bfade..3392d7b 100644
--- a/stringtie.wdl
+++ b/stringtie.wdl
@@ -59,7 +59,7 @@ task Stringtie {
category: "common"
}
assembledTranscriptsFile: {
- description: "Where the output of the assembly whould be written.",
+ description: "Where the output of the assembly should be written.",
category: "required"
}
firstStranded: {
--
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