diff --git a/samtools.wdl b/samtools.wdl index 303f9821743c0bc808e2a2b0c3bda5fb6eeeafa3..771a99699221e07c1e5471b29fa00926d2e52aa8 100644 --- a/samtools.wdl +++ b/samtools.wdl @@ -621,6 +621,7 @@ task View { excludeFilter: {description: "Equivalent to samtools view's `-F` option.", category: "advanced"} excludeSpecificFilter: {description: "Equivalent to samtools view's `-G` option.", category: "advanced"} MAPQthreshold: {description: "Equivalent to samtools view's `-q` option.", category: "advanced"} + targetFile: {description: "A BED file with regions to include", caegory: "advanced"} threads: {description: "The number of threads to use.", category: "advanced"} memory: {description: "The amount of memory this job will use.", category: "advanced"} timeMinutes: {description: "The maximum amount of time the job will run in minutes.", category: "advanced"}