From d5863eecf95da8f78d4d06af2bd6b91bc036a4f0 Mon Sep 17 00:00:00 2001
From: Redmar van den Berg <RedmarvandenBerg@lumc.nl>
Date: Tue, 17 Nov 2020 14:45:02 +0100
Subject: [PATCH] Add parameter meta
---
picard.wdl | 2 ++
1 file changed, 2 insertions(+)
diff --git a/picard.wdl b/picard.wdl
index 20fd1f9..029f089 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -122,8 +122,10 @@ task CollectHsMetrics {
referenceFastaDict: {description: "The sequence dictionary associated with the reference fasta file.", category: "required"}
referenceFastaFai: {description: "The index for the reference fasta file.", category: "required"}
targets: {description: "Picard interval file of the capture targets.", category: "required"}
+ targetsFile: {description: "Picard interval file of the capture targets, the same as targets.", category: "required"}
basename: {description: "The basename/prefix of the output files (may include directories).", category: "required"}
baits: {description: "Picard interval file of the capture bait set.", category: "advanced"}
+ baitsFile: {description: "Picard interval file of the bait set. Uses targets as a fallback when baits is not set", category: "advanced"}
javaXmxMb: {description: "The maximum memory available to the program in megabytes. Should be lower than `memoryMb` to accommodate JVM overhead.", category: "advanced"}
memoryMb: {description: "The amount of memory this job will use in megabytes.", category: "advanced"}
timeMinutes: {description: "The maximum amount of time the job will run in minutes.", category: "advanced"}
--
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