From d4d36e02f167fc1676071d67c6749feee44c510d Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 30 Jun 2021 15:00:45 +0200
Subject: [PATCH] fix mkdir in CPAT
---
CPAT.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/CPAT.wdl b/CPAT.wdl
index afce53e..972613c 100644
--- a/CPAT.wdl
+++ b/CPAT.wdl
@@ -45,7 +45,7 @@ task CPAT {
# to non-optionals.
command {
set -e
- mkdir -p "$(dirname ~{outFilePath})"
+ mkdir -p "$(dirname ~{outputPrefix})"
cpat.py \
--gene ~{gene} \
--outfile ~{outputPrefix} \
--
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