diff --git a/CPAT.wdl b/CPAT.wdl index afce53e2490841b57e1fcb0937279480058cbe07..972613cfdfa24806f98de88c2d48ce97ef81be7d 100644 --- a/CPAT.wdl +++ b/CPAT.wdl @@ -45,7 +45,7 @@ task CPAT { # to non-optionals. command { set -e - mkdir -p "$(dirname ~{outFilePath})" + mkdir -p "$(dirname ~{outputPrefix})" cpat.py \ --gene ~{gene} \ --outfile ~{outputPrefix} \