From d3d2040093a79814a1bf0488d13a44342068c5b5 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Sat, 13 Nov 2021 16:12:52 +0100
Subject: [PATCH] gridss more memory
---
gridss.wdl | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gridss.wdl b/gridss.wdl
index d93f1b8..8c05fe6 100644
--- a/gridss.wdl
+++ b/gridss.wdl
@@ -93,7 +93,8 @@ task GRIDSS {
File? blacklistBed
File? gridssProperties
- Int jvmHeapSizeGb = 185
+ Int jvmHeapSizeGb = 200
+ Int nonJvmMemoryGb = 50
Int threads = 4
Int timeMinutes = ceil(7200 / threads) + 180
String dockerImage = "quay.io/biowdl/gridss:2.12.2"
@@ -126,7 +127,7 @@ task GRIDSS {
runtime {
cpu: threads
- memory: "~{jvmHeapSizeGb + 15}G"
+ memory: "~{jvmHeapSizeGb + nonJvmMemoryGb}G"
time_minutes: timeMinutes # !UnknownRuntimeKey
docker: dockerImage
}
--
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