diff --git a/gridss.wdl b/gridss.wdl index d93f1b808646e0e487f7af994e64b8d0b06cb1e1..8c05fe6154d60ea3d0437a568d56d422f541e81f 100644 --- a/gridss.wdl +++ b/gridss.wdl @@ -93,7 +93,8 @@ task GRIDSS { File? blacklistBed File? gridssProperties - Int jvmHeapSizeGb = 185 + Int jvmHeapSizeGb = 200 + Int nonJvmMemoryGb = 50 Int threads = 4 Int timeMinutes = ceil(7200 / threads) + 180 String dockerImage = "quay.io/biowdl/gridss:2.12.2" @@ -126,7 +127,7 @@ task GRIDSS { runtime { cpu: threads - memory: "~{jvmHeapSizeGb + 15}G" + memory: "~{jvmHeapSizeGb + nonJvmMemoryGb}G" time_minutes: timeMinutes # !UnknownRuntimeKey docker: dockerImage }