From cbebae760bd42f9cf92d8645bf43fff64d9b88b1 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Mon, 23 Jul 2018 14:37:10 +0200
Subject: [PATCH] add index inputs

---
 biopet.wdl | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/biopet.wdl b/biopet.wdl
index 8a23cf6..a97d998 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -311,6 +311,8 @@ task ValidateAnnotation {
     File? refRefflat
     File? gtfFile
     File refFasta
+    File refFastaIndex
+    File refDict
 
     Float? memory
     Float? memoryMultiplier
@@ -373,7 +375,10 @@ task ValidateVcf {
     String? preCommand
     File? toolJar
     File vcfFile
+    File vcfindex
     File refFasta
+    File refFastaIndex
+    File refDict
 
     Float? memory
     Float? memoryMultiplier
-- 
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