diff --git a/star.wdl b/star.wdl index 6d80e9d3c3105268c3b59fbf18d60dcb91b5c67f..da90516d3c098b8bcd1fa7ec448c6a9df5a4c7ba 100644 --- a/star.wdl +++ b/star.wdl @@ -95,10 +95,10 @@ task Star { String outFileNamePrefix String outSAMtype = "BAM SortedByCoordinate" String readFilesCommand = "zcat" - Int outFilterScoreMin = 0 - Float outFilterScoreMinOverLread = 0.66 - Int outFilterMatchNmin = 0 - Float outFilterMatchNminOverLread = 0.66 + Int? outFilterScoreMin + Float? outFilterScoreMinOverLread + Int? outFilterMatchNmin + Float? outFilterMatchNminOverLread String? outStd String? twopassMode = "Basic" Array[String]? outSAMattrRGline