From c75fd8a5272fac78a43303b576f735fb6859cf7c Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 4 Apr 2018 15:56:19 +0200
Subject: [PATCH] ceil runtime memory (must be int)
---
biopet.wdl | 4 ++--
fastqc.wdl | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/biopet.wdl b/biopet.wdl
index cdfdff7..7271f63 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -82,7 +82,7 @@ task SampleConfig {
}
runtime {
- memory: select_first([memory, 3.0]) * select_first([memoryMultiplier, 1.5])
+ memory: ceil(select_first([memory, 3.0]) * select_first([memoryMultiplier, 1.5]))
}
}
@@ -146,6 +146,6 @@ task BaseCounter {
}
runtime {
- memory: select_first([memory, 12.0]) * select_first([memoryMultiplier, 1.5])
+ memory: ceil(select_first([memory, 12.0]) * select_first([memoryMultiplier, 1.5]))
}
}
diff --git a/fastqc.wdl b/fastqc.wdl
index aa9073e..d7850ac 100644
--- a/fastqc.wdl
+++ b/fastqc.wdl
@@ -89,7 +89,7 @@ task extractAdapters {
}
runtime {
- memory: select_first([memory, 4.0]) * select_first([memoryMultiplier, 1.5])
+ memory: ceil(select_first([memory, 4.0]) * select_first([memoryMultiplier, 1.5]))
}
}
--
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