diff --git a/bwa.wdl b/bwa.wdl index 01dae9b479aedf7d8a28d2fac66b4f3de11972cc..3dd7883bd9920d83edd3d9250e9fbad29e496f51 100644 --- a/bwa.wdl +++ b/bwa.wdl @@ -29,7 +29,7 @@ task Mem { String? readgroup Int threads = 4 - String memory = "~{5 + ceil(size(indexFiles, "G"))}G" + String memory = "~{5 + ceil(size(bwaIndex.indexFiles, "G"))}G" String picardXmx = "4G" Int timeMinutes = 1 + ceil(size([read1, read2], "G") * 200 / threads) # A mulled container is needed to have both picard and bwa in one container.