diff --git a/common.wdl b/common.wdl index 2d099aaa9d921e453b3b2b500acb9d953bcb40e2..d5db7685565de1d563ddf2b74ef57396a919035f 100644 --- a/common.wdl +++ b/common.wdl @@ -32,9 +32,10 @@ task CheckFileMD5 { } command { + bash -c ' set -e -o pipefail - MD5SUM=$(md5sum ~{file} | cut -d ' ' -f 1) - [ "$MD5SUM" = '~{md5}' ] + echo "~{md5} ~{file}" | md5sum -c + ' } runtime {