From baeef514937156bda9941067ea9623e78d6673d1 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 15 Jan 2020 16:23:32 +0100
Subject: [PATCH] add parameter_meta to CPAT
---
CPAT.wdl | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/CPAT.wdl b/CPAT.wdl
index f9a77be..73c9d13 100644
--- a/CPAT.wdl
+++ b/CPAT.wdl
@@ -36,6 +36,20 @@ task CPAT {
runtime {
docker: dockerImage
}
+
+ parameter_meta {
+ gene: {description: "Equivalent to CPAT's `--gene` option.", category: "required"}
+ outFilePath: {description: "Equivalent to CPAT's `--outfile` option.", category: "required"}
+ hex: {description: "Equivalent to CPAT's `--hex` option.", category: "required"}
+ logitModel: {description: "Equivalent to CPAT's `--logitModel` option.", category: "required"}
+ referenceGenome: {description: "Equivalent to CPAT's `--ref` option.", category: "advanced"}
+ referenceGenomeIndex: {description: "The index of the reference. Should be added as input if CPAT should not index the reference genome.",
+ category: "advanced"}
+ startCodons: {description: "Equivalent to CPAT's `--start` option.", category: "advanced"}
+ stopCodons: {description: "Equivalent to CPAT's `--stop` option.", category: "advanced"}
+ dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.",
+ category: "advanced"}
+ }
}
# There is also make_hexamer_tab.py and make_logitModel.py
--
GitLab