From b654fee3d284e55e1f73f21621ee01e18fa731a8 Mon Sep 17 00:00:00 2001
From: cagaser <c.agaser@lumc.nl>
Date: Thu, 13 Aug 2020 16:21:30 +0200
Subject: [PATCH] change default jvmHeapSizeGb from 1G to 30G
---
gridss.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gridss.wdl b/gridss.wdl
index 04ea2e8..3b7859b 100644
--- a/gridss.wdl
+++ b/gridss.wdl
@@ -33,7 +33,7 @@ task GRIDSS {
BwaIndex reference
String outputPrefix = "gridss"
- Int jvmHeapSizeGb = 1
+ Int jvmHeapSizeGb = 30
Int threads = 1
String dockerImage = "quay.io/biocontainers/gridss:2.9.4--0"
}
@@ -63,7 +63,7 @@ task GRIDSS {
runtime {
cpu: threads
- memory: "~{jvmHeapSizeGb}G"
+ memory: "~{jvmHeapSizeGb + 1}G"
docker: dockerImage
}
--
GitLab