From b4567cd01bda096514b98f126317d5bdea7f11f8 Mon Sep 17 00:00:00 2001
From: jboom1 <j.boom.me@lumc.nl>
Date: Thu, 12 Dec 2019 12:05:21 +0100
Subject: [PATCH] Add space to talon config file flag.
---
talon.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/talon.wdl b/talon.wdl
index 7082b92..07c1071 100644
--- a/talon.wdl
+++ b/talon.wdl
@@ -470,7 +470,7 @@ task Talon {
echo ${configFileLine} >> ~{outputPrefix}/talonConfigFile.csv
done
talon \
- ~{"--f" + outputPrefix + "/talonConfigFile.csv"}
+ ~{"--f " + outputPrefix + "/talonConfigFile.csv"}
~{"--db " + databaseFile} \
~{"--build " + genomeBuild} \
~{"--threads " + cores} \
--
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