From b382cf745b6d7ed389bbca4efdfa70e37070d835 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 15 Nov 2022 14:23:00 +0100
Subject: [PATCH] adjusted runtime attributes for clever tasks
---
CHANGELOG.md | 6 ++++++
clever.wdl | 8 ++++----
2 files changed, 10 insertions(+), 4 deletions(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2c4cff5..d2e95f6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -9,6 +9,12 @@ that users understand how the changes affect the new version.
-->
version 5.1.0-dev
---------------------------
++ Mateclever's runtime attribute defaults were changed to:
+ + memory: `"250GiB"`
+ + timeMinutes: `2880`
++ Clever's Prediction task's runtime attribute defaults were changed to:
+ + memory: `"80GiB"`
+ + timeMinutes: `2200`
+ The GRIDSS AnnotateSvTypes task now also removes the second breakend of
the breakpoints and single breakends. This will prepare the output better
to be passed into survivor.
diff --git a/clever.wdl b/clever.wdl
index 791a0ba..3b819ed 100644
--- a/clever.wdl
+++ b/clever.wdl
@@ -34,8 +34,8 @@ task Mateclever {
Int maxOffset = 150
Int threads = 10
- String memory = "15GiB"
- Int timeMinutes = 600
+ String memory = "250GiB"
+ Int timeMinutes = 2880
String dockerImage = "quay.io/biocontainers/clever-toolkit:2.4--py36hcfe0e84_6"
}
@@ -94,8 +94,8 @@ task Prediction {
String outputPath = "./clever"
Int threads = 10
- String memory = "55GiB"
- Int timeMinutes = 480
+ String memory = "80GiB"
+ Int timeMinutes = 2200
String dockerImage = "quay.io/biocontainers/clever-toolkit:2.4--py36hcfe0e84_6"
}
--
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