From b15166c371d44fc15a6cb30601f131e33c93633e Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Thu, 18 Jan 2018 16:02:14 +0100
Subject: [PATCH] add new task files
---
cutadapt.wdl | 17 +++++++++++++++++
fastqc.wdl | 0
2 files changed, 17 insertions(+)
create mode 100644 cutadapt.wdl
create mode 100644 fastqc.wdl
diff --git a/cutadapt.wdl b/cutadapt.wdl
new file mode 100644
index 0000000..d0cd8d9
--- /dev/null
+++ b/cutadapt.wdl
@@ -0,0 +1,17 @@
+task cutadapt {
+ String? format
+ Int? cores = 1
+ String? adapter3end
+ String? adapter5end
+ String? adapterAnywhere
+ Float? errorRate
+ Boolean? noIndels
+ Int? count
+ Int? minLength
+ Boolean? matchReadWildcards
+ Boolean? noMatchAdapterWildcards
+ Boolean? noTrim
+ String? maskAdapter
+ Int? cutLength
+
+}
\ No newline at end of file
diff --git a/fastqc.wdl b/fastqc.wdl
new file mode 100644
index 0000000..e69de29
--
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