diff --git a/cutadapt.wdl b/cutadapt.wdl new file mode 100644 index 0000000000000000000000000000000000000000..d0cd8d9ff0f51783d06420040d49251e662b4d5b --- /dev/null +++ b/cutadapt.wdl @@ -0,0 +1,17 @@ +task cutadapt { + String? format + Int? cores = 1 + String? adapter3end + String? adapter5end + String? adapterAnywhere + Float? errorRate + Boolean? noIndels + Int? count + Int? minLength + Boolean? matchReadWildcards + Boolean? noMatchAdapterWildcards + Boolean? noTrim + String? maskAdapter + Int? cutLength + +} \ No newline at end of file diff --git a/fastqc.wdl b/fastqc.wdl new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391