From af5cf337f77dff48e4526e1da9ca6688a1fbe56c Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 22 Jun 2022 12:48:03 +0200
Subject: [PATCH] adjust sage memory and time
---
hmftools.wdl | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/hmftools.wdl b/hmftools.wdl
index ef6355c..6c6ef04 100644
--- a/hmftools.wdl
+++ b/hmftools.wdl
@@ -1226,9 +1226,9 @@ task Sage {
File? coverageBed
Int threads = 32
- String javaXmx = "120G"
- String memory = "121G"
- Int timeMinutes = 1 + ceil(size(select_all([tumorBam, referenceBam]), "G") * 9 / threads)
+ String javaXmx = "8G"
+ String memory = "9G"
+ Int timeMinutes = 720
String dockerImage = "quay.io/biocontainers/hmftools-sage:2.8--hdfd78af_1"
}
--
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